MOMD:
Mouse Oral Microbiome Database
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MOMD Genome Explorer
Selected genome:
Providencia alcalifaciens
WMus003.1
Change genome:
Available genomes
1. Actinomyces bowdenii WMus004.1
2. Bacteroides acidifaciens 19428wH3_P2318
3. Bacteroides acidifaciens 8_33DSS_C5_S8
4. Citrobacter koseri 19428wH4_BL23
5. Dysgonomonas mossii 19428wE4_P11
6. Enterococcus gallinarum 19428wB3_C2
7. Enterococcus gallinarum ENT.1
8. Escherichia coli 19428wD4_HM13
9. Gemella palaticanis CIP106318T.1
10. Gemella sp. 19428wG2_WT2a
11. Gemella sp. GH3.1
12. Gemella sp. GL1.1
13. Granulicatella sp. 19428wC4_WM01
14. Jeotgalicoccus nanhaiensis 19428wE5_W307
15. Lactobacillus johnsonii 19428wE2_CC3
16. Lactobacillus murinus LAC.1
17. Ligilactobacillus murinus 19428wF2_HT12
18. Ligilactobacillus murinus 2_2BalbC1BO2_S2
19. Mammaliicoccus lentus 19428wC1_HT5
20. Mammaliicoccus lentus 19428wG1_AE2
21. Mammaliicoccus lentus 3_3BalbC2O2_S3
22. Mammaliicoccus sciuri 19428wE1_BL01
23. Mammaliicoccus sciuri ACT.1
24. Microbacterium paludicola 19428wA4_P1012
25. Micrococcus aloeverae 19428wE3_DK2
26. Micrococcus yunnanensis 19428wG4_IOV6
27. Muribacter muris 19428wC3_WT12
28. Muribacter muris 7_18CXCR221ANO_S7
29. Neisseria sp. 19428wB4_WF04
30. Parabacteroides goldsteinii 19428wG3_P14
31. Pasteurella sp. 19428wF3_WM03
32. Proteus mirabilis 19428wB5_irhom_Sw
33. Providencia alcalifaciens WMus003.1
34. Rothia nasimurium 19428wA5_irhom_31
35. Sanguibacter inulinus DSM100099.1
36. Shigella flexneri 19428wH2_1568
37. Staphylococcus arlettae 19428wH1_IOV5
38. Staphylococcus aureus 19428wD1_P36
39. Staphylococcus aureus 4_5BalbC4O2_S4
40. Staphylococcus aureus STF.1
41. Staphylococcus capitis GW2.1
42. Staphylococcus saprophyticus 19428wB1_WM06
43. Staphylococcus warneri 19428wF1_P912
44. Staphylococcus xylosus 19428wA1_WT6
45. Streptococcus acidominimus 19428wB2_HT4
46. Streptococcus acidominimus 6_8CXCR23O2_S6
47. Streptococcus cuniculi 19428wD2_WM131
48. Streptococcus danieliae 1_1BalbC1O2_S1
49. Streptococcus danieliae STR.1
50. Streptococcus sp. 19428wA2_WM07
51. Streptococcus sp. 19428wC2_LYSM12
52. Streptococcus sp. 19428wD3_AN2
from a total of 52 genomes
Available tools:
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PROKKA Annotation
NCBI Annotation
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Genome Info
Taxon Description
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PROKKA Genome Annotation:
contigs: 66
bases: 3,919,227 bps
CDS: 3,576
rRNA: 12
Repeat region:
tmRNA: 1
tRNA: 80
misc RNA:
Total features: 3,669
Total number of protein coding genes annotated/found:
3,576
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Items 21 - 40
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Molecule
PID/GenBank ID *^
Sequences
Size (NA/AA) ^
Range ^
Gene Product Name
SEQF5002|JADGLZ010000011.1
SEQF5002_00183
Genome Viewer
NA
AA
627/209
21231-21857
Protein-L-isoaspartate O-methyltransferase
SEQF5002|JADGLZ010000011.1
SEQF5002_00184
Genome Viewer
NA
AA
1062/354
22073-23134
Murein hydrolase activator NlpD
SEQF5002|JADGLZ010000011.1
SEQF5002_00185
Genome Viewer
NA
AA
987/329
23189-24175
RNA polymerase sigma factor RpoS
SEQF5002|JADGLZ010000011.1
SEQF5002_00186
Genome Viewer
NA
AA
774/258
25006-24233
hypothetical protein
SEQF5002|JADGLZ010000011.1
SEQF5002_00187
Genome Viewer
NA
AA
2568/856
27575-25008
DNA mismatch repair protein MutS
SEQF5002|JADGLZ010000011.1
SEQF5002_00188
Genome Viewer
NA
AA
891/297
28671-27781
HTH-type transcriptional regulator GltC
SEQF5002|JADGLZ010000011.1
SEQF5002_00189
Genome Viewer
NA
AA
1647/549
28796-30442
Indole-3-pyruvate decarboxylase
SEQF5002|JADGLZ010000011.1
SEQF5002_00190
Genome Viewer
NA
AA
270/90
30701-30970
hypothetical protein
SEQF5002|JADGLZ010000011.1
SEQF5002_00191
Genome Viewer
NA
AA
546/182
31172-31717
hypothetical protein
SEQF5002|JADGLZ010000011.1
SEQF5002_00192
Genome Viewer
NA
AA
1659/553
33423-31765
Indole-3-pyruvate decarboxylase
SEQF5002|JADGLZ010000011.1
SEQF5002_00193
Genome Viewer
NA
AA
354/118
34028-33675
hypothetical protein
SEQF5002|JADGLZ010000011.1
SEQF5002_00194
Genome Viewer
NA
AA
1242/414
35273-34032
D-amino acid dehydrogenase
SEQF5002|JADGLZ010000011.1
SEQF5002_00195
Genome Viewer
NA
AA
909/303
36238-35330
hypothetical protein
SEQF5002|JADGLZ010000011.1
SEQF5002_00196
Genome Viewer
NA
AA
1206/402
37630-36425
Sodium/glutamate symporter
SEQF5002|JADGLZ010000011.1
SEQF5002_00197
Genome Viewer
NA
AA
1674/558
38293-39966
Benzoylformate decarboxylase
SEQF5002|JADGLZ010000011.1
SEQF5002_00198
Genome Viewer
NA
AA
1344/448
41389-40046
Adenine permease AdeQ
SEQF5002|JADGLZ010000011.1
SEQF5002_00199
Genome Viewer
NA
AA
1809/603
43197-41389
Adenine deaminase 2
SEQF5002|JADGLZ010000011.1
SEQF5002_00200
Genome Viewer
NA
AA
936/312
43343-44278
HTH-type transcriptional regulator HdfR
SEQF5002|JADGLZ010000011.1
SEQF5002_00201
Genome Viewer
NA
AA
888/296
44462-45349
hypothetical protein
SEQF5002|JADGLZ010000011.1
SEQF5002_00202
Genome Viewer
NA
AA
735/245
45493-46227
hypothetical protein
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Items 21 - 40
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* Click GI, UID, Gene Product to go to NCBI record
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Copyright 2020 Forsyth Institute
Page last updated: July 7, 2021 08:39:35
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