MOMD:
Mouse Oral Microbiome Database
Home
Taxonomy
Genomics
Tools
16S rRNA Gene Idnetification
BLAST Search Genomes
Download
Publication
MOMD Genome Explorer
Selected genome:
Shigella flexneri
19428wH2_1568
Change genome:
Available genomes
1. Actinomyces bowdenii WMus004.1
2. Bacteroides acidifaciens 19428wH3_P2318
3. Bacteroides acidifaciens 8_33DSS_C5_S8
4. Citrobacter koseri 19428wH4_BL23
5. Dysgonomonas mossii 19428wE4_P11
6. Enterococcus gallinarum 19428wB3_C2
7. Enterococcus gallinarum ENT.1
8. Escherichia coli 19428wD4_HM13
9. Gemella palaticanis CIP106318T.1
10. Gemella sp. 19428wG2_WT2a
11. Gemella sp. GH3.1
12. Gemella sp. GL1.1
13. Granulicatella sp. 19428wC4_WM01
14. Jeotgalicoccus nanhaiensis 19428wE5_W307
15. Lactobacillus johnsonii 19428wE2_CC3
16. Lactobacillus murinus LAC.1
17. Ligilactobacillus murinus 19428wF2_HT12
18. Ligilactobacillus murinus 2_2BalbC1BO2_S2
19. Mammaliicoccus lentus 19428wC1_HT5
20. Mammaliicoccus lentus 19428wG1_AE2
21. Mammaliicoccus lentus 3_3BalbC2O2_S3
22. Mammaliicoccus sciuri 19428wE1_BL01
23. Mammaliicoccus sciuri ACT.1
24. Microbacterium paludicola 19428wA4_P1012
25. Micrococcus aloeverae 19428wE3_DK2
26. Micrococcus yunnanensis 19428wG4_IOV6
27. Muribacter muris 19428wC3_WT12
28. Muribacter muris 7_18CXCR221ANO_S7
29. Neisseria sp. 19428wB4_WF04
30. Parabacteroides goldsteinii 19428wG3_P14
31. Pasteurella sp. 19428wF3_WM03
32. Proteus mirabilis 19428wB5_irhom_Sw
33. Providencia alcalifaciens WMus003.1
34. Rothia nasimurium 19428wA5_irhom_31
35. Sanguibacter inulinus DSM100099.1
36. Shigella flexneri 19428wH2_1568
37. Staphylococcus arlettae 19428wH1_IOV5
38. Staphylococcus aureus 19428wD1_P36
39. Staphylococcus aureus 4_5BalbC4O2_S4
40. Staphylococcus aureus STF.1
41. Staphylococcus capitis GW2.1
42. Staphylococcus saprophyticus 19428wB1_WM06
43. Staphylococcus warneri 19428wF1_P912
44. Staphylococcus xylosus 19428wA1_WT6
45. Streptococcus acidominimus 19428wB2_HT4
46. Streptococcus acidominimus 6_8CXCR23O2_S6
47. Streptococcus cuniculi 19428wD2_WM131
48. Streptococcus danieliae 1_1BalbC1O2_S1
49. Streptococcus danieliae STR.1
50. Streptococcus sp. 19428wA2_WM07
51. Streptococcus sp. 19428wC2_LYSM12
52. Streptococcus sp. 19428wD3_AN2
from a total of 52 genomes
Available tools:
Genome Viewer
PROKKA Annotation
NCBI Annotation
BLAST Against Genome
Genome Info
Taxon Description
Quick search
:
Match all words
Match any words
Match exact phrase
Partially
In whole field
(leave empty to show all)
NCBI Genome Annotation:
contigs: 237
bases: 5,139,722 bps
CDS: 5,034
rRNA: 13
tRNA: 87
tmRNA: 1
Total number of protein coding genes annotated/found:
4,833
Display
20
50
100
All items per page
Items 1 - 20
🡆
click arrow to navigate by page or
of 242 pages
Molecule ^
PID/GenBank ID *
Sequences
Size (NA/AA) ^
Range ^
Gene Product Name
SEQF5015|JADGKR010000001.1
MBF0739015.1
Genome Viewer
NA
AA
345/115
345-1
ISAs1 family transposase
SEQF5015|JADGKR010000001.1
MBF0739016.1
Genome Viewer
NA
AA
894/298
1687-794
UTP--glucose-1-phosphate uridylyltransferase GalF
SEQF5015|JADGKR010000001.1
MBF0739017.1
Genome Viewer
NA
AA
1395/465
3256-1862
colanic acid biosynthesis protein WcaM
SEQF5015|JADGKR010000001.1
MBF0739018.1
Genome Viewer
NA
AA
1221/407
4487-3267
colanic acid biosynthesis glycosyltransferase WcaL
SEQF5015|JADGKR010000001.1
MBF0739019.1
Genome Viewer
NA
AA
1281/427
5764-4484
colanic acid biosynthesis pyruvyl transferase WcaK
SEQF5015|JADGKR010000001.1
MBF0739020.1
Genome Viewer
NA
AA
1479/493
7518-6040
colanic acid undecaprenyl disphosphate flippase WzxC
SEQF5015|JADGKR010000001.1
MBF0739021.1
Genome Viewer
NA
AA
1395/465
8914-7520
undecaprenyl-phosphate glucose phosphotransferase
SEQF5015|JADGKR010000001.1
MBF0739022.1
Genome Viewer
NA
AA
1371/457
10339-8969
colanic acid biosynthesis phosphomannomutase CpsG
SEQF5015|JADGKR010000001.1
MBF0739023.1
Genome Viewer
NA
AA
1437/479
11968-10532
mannose-1-phosphate guanyltransferase
SEQF5015|JADGKR010000001.1
MBF0739024.1
Genome Viewer
NA
AA
1224/408
13194-11971
colanic acid biosynthesis fucosyltransferase WcaI
SEQF5015|JADGKR010000001.1
MBF0739025.1
Genome Viewer
NA
AA
480/160
13670-13191
GDP-mannose mannosyl hydrolase
SEQF5015|JADGKR010000001.1
MBF0739026.1
Genome Viewer
NA
AA
966/322
14638-13673
GDP-L-fucose synthase
SEQF5015|JADGKR010000001.1
MBF0739027.1
Genome Viewer
NA
AA
1122/374
15762-14641
GDP-mannose 4%2C6-dehydratase
SEQF5015|JADGKR010000001.1
MBF0739028.1
Genome Viewer
NA
AA
549/183
16336-15788
colanic acid biosynthesis acetyltransferase WcaF
SEQF5015|JADGKR010000001.1
MBF0739029.1
Genome Viewer
NA
AA
747/249
17098-16352
colanic acid biosynthesis glycosyltransferase WcaE
SEQF5015|JADGKR010000001.1
MBF0739030.1
Genome Viewer
NA
AA
1218/406
18326-17109
putative colanic acid polymerase WcaD
SEQF5015|JADGKR010000001.1
MBF0739031.1
Genome Viewer
NA
AA
1218/406
19518-18301
colanic acid biosynthesis glycosyltransferase WcaC
SEQF5015|JADGKR010000001.1
MBF0739032.1
Genome Viewer
NA
AA
489/163
20003-19515
colanic acid biosynthesis acetyltransferase WcaB
SEQF5015|JADGKR010000001.1
MBF0739033.1
Genome Viewer
NA
AA
840/280
20845-20006
colanic acid biosynthesis glycosyltransferase WcaA
SEQF5015|JADGKR010000001.1
MBF0739034.1
Genome Viewer
NA
AA
2163/721
23100-20938
tyrosine-protein kinase Wzc
Items 1 - 20
🡆
click arrow to navigate by page or
of 242 pages
Genome Viewer
JBrowse Genome Viewer
* Click GI,UID,Gene Product to go to NCBI record
^ Click column names to toggle sorting
Copyright 2020 Forsyth Institute
Page last updated: July 7, 2021 08:39:35
Powered by
