MOMD:
Mouse Oral Microbiome Database
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MOMD Genome Explorer
Selected genome:
Shigella flexneri
19428wH2_1568
Change genome:
Available genomes
1. Actinomyces bowdenii WMus004.1
2. Bacteroides acidifaciens 19428wH3_P2318
3. Bacteroides acidifaciens 8_33DSS_C5_S8
4. Citrobacter koseri 19428wH4_BL23
5. Dysgonomonas mossii 19428wE4_P11
6. Enterococcus gallinarum 19428wB3_C2
7. Enterococcus gallinarum ENT.1
8. Escherichia coli 19428wD4_HM13
9. Gemella palaticanis CIP106318T.1
10. Gemella sp. 19428wG2_WT2a
11. Gemella sp. GH3.1
12. Gemella sp. GL1.1
13. Granulicatella sp. 19428wC4_WM01
14. Jeotgalicoccus nanhaiensis 19428wE5_W307
15. Lactobacillus johnsonii 19428wE2_CC3
16. Lactobacillus murinus LAC.1
17. Ligilactobacillus murinus 19428wF2_HT12
18. Ligilactobacillus murinus 2_2BalbC1BO2_S2
19. Mammaliicoccus lentus 19428wC1_HT5
20. Mammaliicoccus lentus 19428wG1_AE2
21. Mammaliicoccus lentus 3_3BalbC2O2_S3
22. Mammaliicoccus sciuri 19428wE1_BL01
23. Mammaliicoccus sciuri ACT.1
24. Microbacterium paludicola 19428wA4_P1012
25. Micrococcus aloeverae 19428wE3_DK2
26. Micrococcus yunnanensis 19428wG4_IOV6
27. Muribacter muris 19428wC3_WT12
28. Muribacter muris 7_18CXCR221ANO_S7
29. Neisseria sp. 19428wB4_WF04
30. Parabacteroides goldsteinii 19428wG3_P14
31. Pasteurella sp. 19428wF3_WM03
32. Proteus mirabilis 19428wB5_irhom_Sw
33. Providencia alcalifaciens WMus003.1
34. Rothia nasimurium 19428wA5_irhom_31
35. Sanguibacter inulinus DSM100099.1
36. Shigella flexneri 19428wH2_1568
37. Staphylococcus arlettae 19428wH1_IOV5
38. Staphylococcus aureus 19428wD1_P36
39. Staphylococcus aureus 4_5BalbC4O2_S4
40. Staphylococcus aureus STF.1
41. Staphylococcus capitis GW2.1
42. Staphylococcus saprophyticus 19428wB1_WM06
43. Staphylococcus warneri 19428wF1_P912
44. Staphylococcus xylosus 19428wA1_WT6
45. Streptococcus acidominimus 19428wB2_HT4
46. Streptococcus acidominimus 6_8CXCR23O2_S6
47. Streptococcus cuniculi 19428wD2_WM131
48. Streptococcus danieliae 1_1BalbC1O2_S1
49. Streptococcus danieliae STR.1
50. Streptococcus sp. 19428wA2_WM07
51. Streptococcus sp. 19428wC2_LYSM12
52. Streptococcus sp. 19428wD3_AN2
from a total of 52 genomes
Available tools:
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PROKKA Annotation
NCBI Annotation
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Genome Info
Taxon Description
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NCBI Genome Annotation:
contigs: 237
bases: 5,139,722 bps
CDS: 5,034
rRNA: 13
tRNA: 87
tmRNA: 1
Total number of protein coding genes annotated/found:
4,833
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Items 21 - 40
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Molecule ^
PID/GenBank ID *^
Sequences
Size (NA/AA) ^
Range ^
Gene Product Name
SEQF5015|JADGKR010000011.1
MBF0741139.1
Genome Viewer
NA
AA
2598/866
131676-134273
bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
SEQF5015|JADGKR010000019.1
MBF0741970.1
Genome Viewer
NA
AA
582/194
33448-32867
ACP phosphodiesterase
SEQF5015|JADGKR010000006.1
MBF0740348.1
Genome Viewer
NA
AA
237/79
156558-156794
acyl carrier protein
SEQF5015|JADGKR010000009.1
MBF0740847.1
Genome Viewer
NA
AA
588/196
148518-149105
4'-phosphopantetheinyl transferase AcpT
SEQF5015|JADGKR010000019.1
MBF0742031.1
Genome Viewer
NA
AA
1194/398
96420-95227
multidrug efflux RND transporter periplasmic adaptor subunit AcrA
SEQF5015|JADGKR010000002.1
MBF0739406.1
Genome Viewer
NA
AA
3114/1038
138719-135606
multidrug efflux RND transporter permease AcrD
SEQF5015|JADGKR010000004.1
MBF0739987.1
Genome Viewer
NA
AA
1158/386
222531-223688
multidrug efflux RND transporter periplasmic adaptor subunit AcrE
SEQF5015|JADGKR010000004.1
MBF0739988.1
Genome Viewer
NA
AA
3105/1035
223700-226804
multidrug efflux RND transporter permease subunit AcrF
SEQF5015|JADGKR010000019.1
MBF0742032.1
Genome Viewer
NA
AA
648/216
96562-97209
multidrug efflux transporter transcriptional repressor AcrR
SEQF5015|JADGKR010000004.1
MBF0739986.1
Genome Viewer
NA
AA
663/221
222132-221470
multidrug efflux transporter transcriptional repressor AcrS
SEQF5015|JADGKR010000020.1
MBF0742084.1
Genome Viewer
NA
AA
150/50
55716-55865
multidrug efflux pump accessory protein AcrZ
SEQF5015|JADGKR010000014.1
MBF0741450.1
Genome Viewer
NA
AA
1959/653
77005-75047
acetate--CoA ligase
SEQF5015|JADGKR010000014.1
MBF0741448.1
Genome Viewer
NA
AA
1650/550
74535-72886
cation/acetate symporter ActP
SEQF5015|JADGKR010000001.1
MBF0739183.1
Genome Viewer
NA
AA
1065/355
194697-193633
bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada
SEQF5015|JADGKR010000008.1
MBF0740700.1
Genome Viewer
NA
AA
1002/334
168203-167202
adenosine deaminase
SEQF5015|JADGKR010000005.1
MBF0740100.1
Genome Viewer
NA
AA
1767/589
99578-101344
adenine deaminase
SEQF5015|JADGKR010000005.1
MBF0740150.1
Genome Viewer
NA
AA
1338/446
152304-150967
adenine permease AdeP
SEQF5015|JADGKR010000005.1
MBF0740099.1
Genome Viewer
NA
AA
1335/445
99403-98069
adenine permease AdeQ
SEQF5015|JADGKR010000003.1
MBF0739623.1
Genome Viewer
NA
AA
2676/892
99683-97008
bifunctional acetaldehyde-CoA/alcohol dehydrogenase
SEQF5015|JADGKR010000038.1
MBF0743063.1
Genome Viewer
NA
AA
1011/337
21204-20194
alcohol dehydrogenase AdhP
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Copyright 2020 Forsyth Institute
Page last updated: July 7, 2021 08:39:35
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